CalTrack: High Throughput Automated Calcium Transient Analysis in Cardiomyocytes

Circulation Research, 2021

Nrf2 overexpression rescues the RPE in mouse models of retinitis pigmentosa

JCI Insight, 2021

On Identification and Retrieval of Near-Duplicate Biological Images: A New Dataset and Protocol

ICPR, Milan, 2021

FIT2 is an acyl-coenzyme A diphosphatase crucial for endoplasmic reticulum homeostasis

Journal of Cell Biology, 2020

Serial scanning electron microscopy of anti-PKHD1L1 immuno-gold labeled mouse hair cell stereocilia bundles

Nature Scientific Data, 2020

Neurons that regulate mouse torpor

Nature, 2020

PKHD1L1 is a coat protein of hair-cell stereocilia and is required for normal hearing

Nature Communications, 2019

Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues

Nature Biotechnology, 2019

Molecular and anatomical organization of the dorsal raphe nucleus

eLife, 2019

SarcTrack: An Adaptable Software Tool for Efficient Large-Scale Analysis of Sarcomere Function in hiPSC-Cardiomyocytes

Circulation Research, 2019

Highly multiplexed in situ protein imaging with signal amplification by Immuno-SABER

bioRxiv, 2018

Image Forensics: Detecting Duplication of Scientific Images with Manipulation-Invariant Image Similarity

arXiv, 2018

Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex

Nature Neuroscience, 2018

Bots for Software-Assisted Analysis of Image-Based Transcriptomics

IEEE ICCV, Bio-Image Computing Workshop, 2017

Finding Mirror Symmetry via Registration and Optimal Symmetric Pairwise Assignment of Curves

IEEE ICCV, Detecting Symmetry in the Wild Workshop, 2017

Whole-Brain Serial-Section Electron Microscopy in Larval Zebrafish

Nature, 2017

A Convolutional Approach to Reflection Symmetry

Pattern Recognition Letters, 2017

Circularity Features for Nuclei Segmentation

CABI, 2016

Mirror Symmetry Database

Available Online, 2016

Complex-Valued Hough Transforms for Circles

ICIP, Quebec City, 2015

Top 10% Papers in ICIP 2015 (presented as talk, and at the Show & Tell Session)

Shape Statistics for Cell Division Detection in Time-Lapse Videos of Early Mouse Embryo

ICIP, Paris, 2014

Ellipses from Triangles

ICIP, Paris, 2014

Label Free Cell-Tracking and Division Detection Based on 2D Time-Lapse Images For Lineage Analysis of Early Embryo Development

Computers in Biology and Medicine, 2014

Honorable Mention Paper (top 10% out of 225 papers published in the journal during 2014)

Mirror Symmetry Histograms for Capturing Geometric Properties in Images

CVPR, Columbus, 2014

Mouse Embryo Tracking Database

Available Online, 2014

On the Product Rule for Classification Problems

arXiv, 2013

Wavelet-Based Circular Hough Transform and its Application in Embryo Development Analysis

VISAPP, Barcelona, 2013

Human-Robot Percussion Ensemble: Anticipation on the Basis of Visual Cues

IEEE Robotics and Automation Magazine, Dec 2013

On Automated Tracking and Analysis of Embryo Developmental Trajectory

Automated Imaging and High-Throuput Phenotyping Meeting, Cold Spring Harbor, 2012

Developing and Composing for a Robotic Musician Using Different Modes of Interaction

International Computer Music Conference, Ljubljana, Slovenia, 2012

Visual Cues-Based Anticipation for Percussionist-Robot Interaction

7th ACM/IEEE International Conference on Human-Robot Interaction, Boston, USA, 2012


PhD-related projects